Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015798528.1_cds_XP_016460777.1_5385
CDS Infomation

[gene=LOC107784194] [db_xref=GeneID:107784194] [protein=pentatricopeptide repeat-containing protein At2g27610-like isoform X3] [protein_id=XP_016460777.1] [location=complement(join(18405..20342,20444..20464))] [gbkey=CDS]
Sequence

ATGAAACCAAAACTATTCATGGTATTATTTGATAAAATGTTGCAGAAGAATGTCTTTTCT
TGGACTGTCATGATTGTGGGATCAATAGAAAATGGATTTTTCTACAACGGGTTCAAATAC
TTCCGAGAGATGCTAGATTATGGAATGCTGCCAGATGGATTTGCTTACTCGGCTGCACTG
CGGTTGTGTGTTGCTTTAGTAAGCCTTGAATTAGGTAAAATGGTACATGCTCAGATTGTT
GTGAGAGGCTTTTCTTCAAATGTCATTATTAATACATCACTTCTTAACATGTATGCCAAG
CTGGGGAATGTTGAGGATTCATCTCTTGTTTTCAACAGTATGAGTGAAAGGAATGCGGTC
TCTTGGAATGCAATAATATCAGGACTTACTGCTAATGGTCTTCATTTGGAAGCGTTTAAT
CGTTTCATTGAAATGAAAAATAAAGGATTTTCCCAAGATGTTTACACTTTAGTTGGTGTA
ATGAAGGCAGTCAGGAGTTTAGGTGATATTGGCAAGGGTAAGGTAATCCATAGCTGTGTC
TCTGAGTTGGATATGGATTCTAATGTTGTGGTAGGCACTGCACTGATTGATATGTATGCT
GAATGCGGTGCTTTATGTGAGGCAAAGACTGTTTTTGATTCTAATTTCAGCAATTGTGGA
GTAAATATGCCATGGAACGCAATGATTTCTGGTTATACACGGTGTAGATGTGGCCAAGAA
GCTTTACAGCTATATGTTAATATGTGTAAAAAGAATGTTAGGTCTGATATTTACACTTAC
TGTAGTCTGTTCGACGCGATTGCTGAATCAAAATATTCCAAGTTTTTAATGGAGGTTCAT
GCGGCGGTTCTTAAATCTGAATATGATAATATATCCCTTAGTGTGCAGAATGCAATTGCA
GATGCTTATGCTAAATGTGGGTCTCTTGAGGGTGTAAGGAAGATCTTTGACAGAATGGAA
CAAAGAGACATAGTGTCTTGGACCACTCTTGTGACTGCATATTCGCAAGGTTCCCAATGG
GAGGCAGCTATAGCCGTTTTTTCTCAAATGAGGGAAGAAGGCTTTGCAGTCAATCAGTAT
ACTTTGGCTAGCACCCTTGTTGCATGCGCTAGCCTATGCTATCTTGAGTACGGTCGGCAA
CTTCATGGGCTCCAATACAAAACTGGGTTACAGAATGAAAGTTACATAGAAAGTGCACTG
GTAGATATGTATGGCAAGTGTGGGAGCATAACTGAGGCAGAAAAGGTATTTGGTTGTATT
TCCAATGCTGATGCTGTTTCTTGGACTGCCATGATATCTGGGTATGCCCAACATGGTTCT
GTATTTTGTGCACTTGAACTATTCAAGAAAATGGAGCAATTGGGCATTAAACCCACTGCA
GTTACATTATTGAGCATTTTGTTTGCTTGTAGCCATGGTGGATTGGTTAAAGAAGGTCTT
CACTTTTTTTGGTCAATGGGTAAAAGGTATAATTTGGTACCAGAGATGCAGCATTATGCT
TGTGTGGTTGACCTCCTTGGCCGTGTGGGTCTTCTAATTGAAGCGTTCGAATTTATCAGA
AAAATGCCTGTTGAACCGGATGAAATGGTTTGGCAATCACTGTTAAGTGCATGTAGGATT
CATAGAGATTCTGAGCTAGGAGAAATAGCTGCCAAGAAAATCCTTTCTGTTTGCCCTCAA
TATTCAGCTGCATATGTTCTTTTATCCAATACATATATGGAAACTGGGAATTTTAGAGAG
GGAATTGACCTGAGAAATGTGATGAAAAAGCAAGGGGTTAAAAAGGAGCCGGGCTTTAGT
TGGATTACGATTAATGGTAAAGCCCATAAATTTTATGCAAGCGATCAGGAACACCCAGAG
AAAAAAAGCATTTATCTTATGCTGGAAGAATTAAGGGTGGATATGAAGGCTTTGGGTTAT
AAACCAGATTTCAGATCTGTTTTAACATCCGGAGATTGA

Peptide Sequence

PEP ID

XP_016460777.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like isoform X3 [Nicotiana tabacum]
Sequence

MKPKLFMVLFDKMLQKNVFSWTVMIVGSIENGFFYNGFKYFREMLDYGMLPDGFAYSAAL
RLCVALVSLELGKMVHAQIVVRGFSSNVIINTSLLNMYAKLGNVEDSSLVFNSMSERNAV
SWNAIISGLTANGLHLEAFNRFIEMKNKGFSQDVYTLVGVMKAVRSLGDIGKGKVIHSCV
SELDMDSNVVVGTALIDMYAECGALCEAKTVFDSNFSNCGVNMPWNAMISGYTRCRCGQE
ALQLYVNMCKKNVRSDIYTYCSLFDAIAESKYSKFLMEVHAAVLKSEYDNISLSVQNAIA
DAYAKCGSLEGVRKIFDRMEQRDIVSWTTLVTAYSQGSQWEAAIAVFSQMREEGFAVNQY
TLASTLVACASLCYLEYGRQLHGLQYKTGLQNESYIESALVDMYGKCGSITEAEKVFGCI
SNADAVSWTAMISGYAQHGSVFCALELFKKMEQLGIKPTAVTLLSILFACSHGGLVKEGL
HFFWSMGKRYNLVPEMQHYACVVDLLGRVGLLIEAFEFIRKMPVEPDEMVWQSLLSACRI
HRDSELGEIAAKKILSVCPQYSAAYVLLSNTYMETGNFREGIDLRNVMKKQGVKKEPGFS
WITINGKAHKFYASDQEHPEKKSIYLMLEELRVDMKALGYKPDFRSVLTSGD

Transcript Sequence

Gene sequence data has not been registered.